Download AГia Sofia Rodriguez
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Download AГ±ia Sofia Rodriguez
SSETracer, StrandTwister, and AxisComparison are toolsfor identifying secondary structure from cryo-EM maps. They can be usedfrom within Chimera (details and download). Developed by the Jing He lab and collaborators.See also Haslam et al., Bioinformatics Research and Applications. ISBRA 2018. Lecture Notes in Computer Science, vol 10847. Springer (2018).
The MOLE 2.5 plugin to Chimera allows exploration and analysis of channels, tunnels and pores within biomacromolecules. Channel profiles and physicochemical properties are reported.Documentation and plugin download (which includes the MOLE binary)are available from theMOLEwebsite. On platforms other than Windows,Monomust also be installed. MOLE is described inSehnal et al., J Chemoinf 5:39 (2013)and is developed by theWebChemistry group at theCzech Republic National Centre for Biomolecular Research.
Assemble2allows designing 2D RNA structures interactivelyand generating corresponding 3D structures in Chimera. It uses web services for RNA structure prediction and refinement.Executables, source code, and documentation are available fordownload.Assemble2 is developed by Fabrice Jossinet (now at theUniversity of Strasbourg).See also: RNArtist
The LabelHash Server searches the PDB for matches to a user-specified3D motif (pattern of residues). The authors provide the Chimera extension ViewMatchfor looking through the hits superimposed on the query.LabelHash can also bedownloadedfor local command-line use.LabelHash and ViewMatch are provided by theKavraki Lab at Rice University. 041b061a72